PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0357719.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 328aa    MW: 34756.6 Da    PI: 8.4123
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0357719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.81.7e-651142773154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94 
                       gta+CqdCGnqakkdC h+RCR CCksrgfdC thvkstWvpaa+rrerq +++ a++  ++++++ ++k++r    ++++++++s+t++s++
  Lj0g3v0357719.1 114 GGTATCQDCGNQAKKDCGHRRCRACCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVasQTTTTTTTSHTSTSNT 207
                      5889***********************************************9999998888888899999999987445666777889999999 PP

           DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++++etss          lP++v+++avf+cvrv++vd ge+e+aYq+ v+igGh+fkG+Ly+qG+e+
  Lj0g3v0357719.1 208 TPPRSFETSSshqdvsfkesLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVEN 277
                      *******9999********************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.1E-60116276IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.6E-26118160IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-26228275IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MWPGASSARP ISYSHVASDM VGLRDVFLVA PASSFNHHSE SLMPDPHLNS SNNPVTALGV  60
GMIPLLGGGI QLWHDQQQQQ QHEQNYLKKH ALVEHDNGDG GGGGITALVA TSGGGTATCQ  120
DCGNQAKKDC GHRRCRACCK SRGFDCPTHV KSTWVPAARR RERQVMAERA AAAGSSASTS  180
GHAKKPRLVA SQTTTTTTTS HTSTSNTTPP RSFETSSSHQ DVSFKESLPR QVRAPAVFKC  240
VRVTAVDGGE DEFAYQAMVK IGGHLFKGLL YNQGVENRDG YPDLSELHLG GRNGVSSSSP  300
MMNPSFDVYV ASGSGGFLGG SSTYGNPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141493.11e-113hypothetical protein PHAVU_008G200700g
SwissprotQ94CK96e-88LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLV7B6F11e-113V7B6F1_PHAVU; Uncharacterized protein
STRINGGLYMA02G44860.21e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.44e-85Lateral root primordium (LRP) protein-related